Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015847259.1_cds_XP_016509984.1_22871
CDS Infomation

[gene=LOC107827378] [db_xref=GeneID:107827378] [protein=protoporphyrinogen oxidase, chloroplastic] [frame=2] [exception=annotated by transcript or proteomic data] [protein_id=XP_016509984.1] [location=complement(join(51827..52126,52828..52931,53206..53365,53926..54097,54470..54550,54664..54811,54960..55044,55348..>55777))] [gbkey=CDS]
Sequence

TACACAGTTCCTTCCTCAGCGGTCGACGGCGGACCCGCCGCGGAGCTGGACTGTGTTATA
GTTGGAGCAGGAATTAGTGGCCTCTGCATTGCGCAGGTGATGTCCGCTAATTACCCCAAT
TTGATGGTAACCGAGGCGAGAGATCGTGCCGGTGGCAACATAACGACTGTGGAAAGAGAC
GGCTATTTGTGGGAAGAAGGTCCCAACAGTTTCCAGCCGTCCGATCCTATGTTGACTATG
GCAGTAGATTGTGGATTGAAGGATGATTTGGTGTTGGGAGATCCTAATGCGCCCCGTTTC
GTTTTGTGGAAGGGTAAATTAAGGCCCGTCCCCTCAAAACTCACTGATCTTCCCTTTTTT
GATTTGATGAGCATTCCTGGCAAGTTGAGAGCTGGTTTTGGTGCCATTGGCCTCCGCCCT
TCACCTCCAGGTCATGAGGAATCAGTTGAGCAGTTCGTGCGTCGTAATCTTGGTGGCGAA
GTCTTTGAACGCTTGATAGAACCATTTTGTTCTGGTGTTTATGCTGGTGATCCCTCAAAA
CTGAGTATGAAAGCAGCATTTGGGAAAGTTTGGAAGTTGGAAGAAACTGGTGGTAGCATT
ATTGGAGGAACCTTTAAAGCAATAAAGGAGAGATCCAGTACACCTAAAGCGCCCCGCGAT
CCGCGTTTACCTAAACCAAAAGGACAGACAGTTGGATCATTCAGGAAGGGTCTCAGAATG
CTGCCGGATGCAATCAGTGCAAGATTGGGAAGCAAATTAAAACTATCATGGAAGCTTTCT
AGCATTACTAAGTCAGAAAAAGGAGGATATCACTTGACATACGAGACACCAGAAGGAGTA
GTTTCTCTTCAAAGTCGAAGCATTGTCATGACTGTGCCATCCTATGTAGCAAGCAACATA
TTACGTCCTCTTTCGGTTGCCGCAGCAGATGCACTTTCAAATTTCTACTATCCCCCAGTT
GGAGCAGTCACAATTTCATATCCTCAAGAAGCTATTCGTGATGAGCGTCTGGTTGATGGT
GAACTAAAGGGATTTGGGCAGTTGCATCCACGTACACAGGGAGTGGAAACACTAGGAACG
ATATATAGTTCATCACTCTTCCCTAACCGTGCCCCAAAAGGTCGGGTGCTACTCTTGAAC
TACATTGGAGGAGCAAAAAATCCTGAAATTTTGTCTAAGACGGAGAGCCAACTTGTGGAA
GTAGTTGATCGTGACCTCAGAAAAATGCTTATAAAACCCAAAGCTCAAGATCCTCTTGTT
GTGGGTGTGCGAGTATGGCCACAAGCTATCCCACAGTTTTTGGTTGGTCATCTGGATACG
CTAAGTACTGCAAAAGCTGCTATGAATGATAATGGGCTTGAAGGGCTGTTTCTTGGGGGT
AATTATGTGTCAGGTGTAGCATTGGGGAGGTGTGTTGAAGGTGCTTATGAAGTTGCATCC
GAGGTAACAGGATTTCTGTCTCGGTATGCATACAAATGA

Peptide Sequence

PEP ID

XP_016509984.1
PEP Infomation

PREDICTED: protoporphyrinogen oxidase, chloroplastic [Nicotiana tabacum]
Sequence

MTTTPIANHPNIFTHQSSSSPLAFLNRTSFIPFSSISKRNSVNCNGWRTRCSVAKDYTVP
SSAVDGGPAAELDCVIVGAGISGLCIAQVMSANYPNLMVTEARDRAGGNITTVERDGYLW
EEGPNSFQPSDPMLTMAVDCGLKDDLVLGDPNAPRFVLWKGKLRPVPSKLTDLPFFDLMS
IPGKLRAGFGAIGLRPSPPGHEESVEQFVRRNLGGEVFERLIEPFCSGVYAGDPSKLSMK
AAFGKVWKLEETGGSIIGGTFKAIKERSSTPKAPRDPRLPKPKGQTVGSFRKGLRMLPDA
ISARLGSKLKLSWKLSSITKSEKGGYHLTYETPEGVVSLQSRSIVMTVPSYVASNILRPL
SVAAADALSNFYYPPVGAVTISYPQEAIRDERLVDGELKGFGQLHPRTQGVETLGTIYSS
SLFPNRAPKGRVLLLNYIGGAKNPEILSKTESQLVEVVDRDLRKMLIKPKAQDPLVVGVR
VWPQAIPQFLVGHLDTLSTAKAAMNDNGLEGLFLGGNYVSGVALGRCVEGAYEVASEVTG
FLSRYAYK

Transcript Sequence

Gene sequence data has not been registered.